[BioC] BSgenome packages for ce10 and panTro3 (was Re: BSgenome.Celegans.UCSC.cd10 for WS220)
hpages at fhcrc.org
Tue May 8 19:47:12 CEST 2012
Hi Julie and other BSgenome users,
I've just made 2 new BSgenome data packages, one for ce10 (Oct. 2010,
WS220 assembly), and one for panTro3 (Oct. 2010, CGSC Build 2.1.3):
The data in both packages were downloaded from:
Note that, strangely, ce10 is not listed in this table:
The 2 new packages will become available for Bioc 2.11 users
(Bioc devel) via biocLite() in less than 1 hour. Only the "source"
packages are available for now. Windows and Mac users need to install
with biocLite( ... , type="source").
Please let me know if you have any question or find any issue with
those packages. Thanks!
On 05/07/2012 08:00 AM, Zhu, Lihua (Julie) wrote:
> Hope all is well with you! Please let me know when the
> BSgenome.Celegans.UCSC.cd10 for WS220 is available for use.
> Many thanks!
> Best regards,
> On 4/20/12 5:08 PM, "Julie Zhu"<julie.zhu at umassmed.edu> wrote:
>> Great! Thanks so much for your kind help!
>> Best regards,
>> On 4/20/12 4:04 PM, "Hervé Pagès"<hpages at fhcrc.org> wrote:
>>> Hi Julie,
>>> On 04/20/2012 10:48 AM, Zhu, Lihua (Julie) wrote:
>>>> Is it possible to add BSgenome.Celegans.UCSC.ce10 for WS220 in the
>>>> Bioconductor release? Many thanks for your help!
>>> Sure. Given the number of sticky notes that are accumulating in front
>>> my eyes every day, it might take me a few days though. Thanks for your
>>>> Best regards,
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