[BioC] Full error messages?

[Ed Siefker]

To follow up, I found 'geterrmessage()', but it still truncates the message.

In the documentation, it says that geterrmessage() uses the option
"warning.length" to truncate the message.

If I could increase the value of "warning.length", this would fix my problem
but when I do that:

> options("warning.length")
$warning.length
[1] 1000

> options("warning.length"=1000)
> options("warning.length"=10000)
Error in options(warning.length = 10000) :
  invalid value for 'warning.length'


I'm stuck again, any hints?


On Thu, May 3, 2012 at 2:46 PM, Ed Siefker <ebs15242 at gmail.com> wrote:
> I'm trying to read in some array data with minfi.
> Apparently I missed some arrays when fetching
> my data, so there are some lines in my targets
> that don't have actual files to read.
>
> That's not a big problem, the problem is
> when R throws an error, there are enough missing
> files that I can't read the entire error message.
>
> Are these error messages stored somewhere
> where I can get to the entire message, and
> parse it so I can get a list of the missing files?