[BioC] beadarray package: BASH error

[Kemal Akat]

Dear Dan and Mark,

Thank you for taking care of this so quickly.
I appreciate it!

Best regards,
Kemal


On Mar 27, 2012, at 4:42 PM, Dan Tenenbaum wrote:

> Sounds like the fix is on the way.
> Dan
> 
> 
> 
> ---------- Forwarded message ----------
> From: Mark Dunning <Mark.Dunning at cancer.org.uk>
> Date: Tue, Mar 27, 2012 at 12:33 PM
> Subject: RE: [BioC] beadarray package: BASH error
> To: Dan Tenenbaum <dtenenba at fhcrc.org>
> 
> 
> Hi Dan,
> 
> Thanks for the message. I don't have access to the svn right now, but
> I'll fix it tomorrow. It's a trivial fix.
> 
> Regards,
> 
> Mark
> 
> ________________________________________
> From: Dan Tenenbaum [dtenenba at fhcrc.org]
> Sent: 27 March 2012 19:43
> To: kakat at rockefeller.edu
> Cc: bioconductor at r-project.org; Mark Dunning
> Subject: Re: [BioC] beadarray package: BASH error
> 
> Hi Kemal,
> 
> On Tue, Mar 27, 2012 at 11:35 AM, Kemal Akat [guest]
> <guest at bioconductor.org> wrote:
>> 
>> Hi all,
>> 
>> When I run the BASH command from the bead array package with my data or the example data from the beadarray package I get the following error (code for the example data):
>> 
>> R> library("beadarray")
>> R> library("beadarrayExampleData")
>> R> data(exampleBLData)
>> R> output <- BASH(exampleBLData,array=1:2,useLocs=FALSE)
>> Error in BASH(exampleBLData, array = 1:2, useLocs = FALSE) :
>>  BASH can be applied to only one array at a time
>> 
>> Does anyone have an idea what is wrong?
> 
> Seems like a possible error in the example.
> 
> CC'ing the package maintainer here.
> Dan
> 
> 
>> 
>> Thank you!
>> Kemal
>> 
>> 
>> 
>>  -- output of sessionInfo():
>> 
>> R> sessionInfo()
>> R version 2.15.0 alpha (2012-03-08 r58645)
>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>> 
>> locale:
>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>> 
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>> 
>> other attached packages:
>> [1] beadarrayExampleData_1.0.3 BiocInstaller_1.3.9
>> [3] beadarray_2.5.9            ggplot2_0.9.0
>> [5] Biobase_2.15.4             BiocGenerics_0.1.14
>> 
>> loaded via a namespace (and not attached):
>>  [1] AnnotationDbi_1.17.27 BeadDataPackR_1.7.1   colorspace_1.1-1
>>  [4] DBI_0.2-5             dichromat_1.2-4       digest_0.5.1
>>  [7] grid_2.15.0           IRanges_1.13.34       limma_3.11.19
>> [10] MASS_7.3-17           memoise_0.1           munsell_0.3
>> [13] plyr_1.7.1            proto_0.3-9.2         RColorBrewer_1.0-5
>> [16] reshape2_1.2.1        RSQLite_0.11.1        scales_0.2.0
>> [19] stats4_2.15.0         stringr_0.6           tools_2.15.0
>> R>
>> 
>> --
>> Sent via the guest posting facility at bioconductor.org.
>> 
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