[BioC] Fwd: beadarray package: BASH error

[Dan Tenenbaum]

Sounds like the fix is on the way.
Dan



---------- Forwarded message ----------
From: Mark Dunning <Mark.Dunning at cancer.org.uk>
Date: Tue, Mar 27, 2012 at 12:33 PM
Subject: RE: [BioC] beadarray package: BASH error
To: Dan Tenenbaum <dtenenba at fhcrc.org>


Hi Dan,

Thanks for the message. I don't have access to the svn right now, but
I'll fix it tomorrow. It's a trivial fix.

Regards,

Mark

________________________________________
From: Dan Tenenbaum [dtenenba at fhcrc.org]
Sent: 27 March 2012 19:43
To: kakat at rockefeller.edu
Cc: bioconductor at r-project.org; Mark Dunning
Subject: Re: [BioC] beadarray package: BASH error

Hi Kemal,

On Tue, Mar 27, 2012 at 11:35 AM, Kemal Akat [guest]
<guest at bioconductor.org> wrote:
>
> Hi all,
>
> When I run the BASH command from the bead array package with my data or the example data from the beadarray package I get the following error (code for the example data):
>
> R> library("beadarray")
> R> library("beadarrayExampleData")
> R> data(exampleBLData)
> R> output <- BASH(exampleBLData,array=1:2,useLocs=FALSE)
> Error in BASH(exampleBLData, array = 1:2, useLocs = FALSE) :
>  BASH can be applied to only one array at a time
>
> Does anyone have an idea what is wrong?

Seems like a possible error in the example.

CC'ing the package maintainer here.
Dan


>
> Thank you!
> Kemal
>
>
>
>  -- output of sessionInfo():
>
> R> sessionInfo()
> R version 2.15.0 alpha (2012-03-08 r58645)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] beadarrayExampleData_1.0.3 BiocInstaller_1.3.9
> [3] beadarray_2.5.9            ggplot2_0.9.0
> [5] Biobase_2.15.4             BiocGenerics_0.1.14
>
> loaded via a namespace (and not attached):
>  [1] AnnotationDbi_1.17.27 BeadDataPackR_1.7.1   colorspace_1.1-1
>  [4] DBI_0.2-5             dichromat_1.2-4       digest_0.5.1
>  [7] grid_2.15.0           IRanges_1.13.34       limma_3.11.19
> [10] MASS_7.3-17           memoise_0.1           munsell_0.3
> [13] plyr_1.7.1            proto_0.3-9.2         RColorBrewer_1.0-5
> [16] reshape2_1.2.1        RSQLite_0.11.1        scales_0.2.0
> [19] stats4_2.15.0         stringr_0.6           tools_2.15.0
> R>
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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