[BioC] Copy number analysis

Djork-Arné Clevert okko at clevert.de
Mon Mar 19 21:33:49 CET 2012

Hi Raj,

please check out the cn.farms package for detecting 
copy number variations in microarray data with a low 
false discovery rate. 
For further information about the algorithm and its 
assessment just drop me an email or get the paper 
from Nucleic Acids Research: 


Am 17.03.2012 um 01:35 schrieb Raj [guest]:

> Dear Bioconductor community, 
>  I am looking for a package for Copy number analysis using CEL file that I have obtained from Affy SNP 6.0. I have CHP files from birdseed. Now I want to analyze my data for Copy number and Loss of heterozygosity (using B allele frequency) and find regions of CN alterations and LOH with or without Copy number changes. Can anyone direct me to the correct package available for this?
> -- output of sessionInfo(): 
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