[BioC] Copy number analysis
okko at clevert.de
Mon Mar 19 21:33:49 CET 2012
please check out the cn.farms package for detecting
copy number variations in microarray data with a low
false discovery rate.
For further information about the algorithm and its
assessment just drop me an email or get the paper
from Nucleic Acids Research:
Am 17.03.2012 um 01:35 schrieb Raj [guest]:
> Dear Bioconductor community,
> I am looking for a package for Copy number analysis using CEL file that I have obtained from Affy SNP 6.0. I have CHP files from birdseed. Now I want to analyze my data for Copy number and Loss of heterozygosity (using B allele frequency) and find regions of CN alterations and LOH with or without Copy number changes. Can anyone direct me to the correct package available for this?
> -- output of sessionInfo():
> R studio
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