[BioC] EBImage in R-Cloud

[Dan Tenenbaum]

On Tue, Mar 13, 2012 at 12:54 AM, Nicole [guest] <guest at bioconductor.org> wrote:
>
> How can I use EBImage on R-Cloud. It seems I have to install ImageMagic first, but how can I install it on R-Cloud?
> Thanks.


Sounds like a question for the R-Cloud list:

http://listserver.ebi.ac.uk/mailman/listinfo/rcloud

Dan

>
>  -- output of sessionInfo():
>
> biocLite("EBImage")
> Using R version 2.13.0, biocinstall version 2.8.4.
> Installing Bioconductor version 2.8 packages:
> [1] "EBImage"
> Please wait...
>
> Installing package(s) into '/net/nas20/rcloud_data/storage/wdir/...../RLibs'
> (as 'lib' is unspecified)
> trying URL 'http://mirrors.ebi.ac.uk/bioconductor/packages/2.8/bioc/src/contrib/EBImage_3.8.0.tar.gz'
> Content type 'application/x-gzip' length 5258014 bytes (5.0 Mb)
> opened URL
> ==================================================
> downloaded 5.0 Mb
>
> checking for Magick-config... no
> configure: error: "ImageMagick or ImageMagick includes not found!"
>
> The downloaded packages are in
>        '/net/nas20/rcloud_data/storage/tempdir/RtmpVZTZl5/downloaded_packages'
> Warning message:
> In install.packages(pkgs = pkgs, repos = repos, ...) :
>  installation of package 'EBImage' had non-zero exit status
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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