[BioC] XPS package working with Affymetrix GeneChip 1.0 ST at gene level

[Groot, Philip de]

I created some CDF-files for these chips that you can also use (not sure on the r4 though):

http://nmg-r.bioinformatics.nl/NuGO_R.html

Regards,

Dr. Philip de Groot
Bioinformatician / Microarray analysis expert 

Wageningen University / TIFN
Netherlands Nutrigenomics Center (NNC)
Nutrition, Metabolism & Genomics Group
Division of Human Nutrition
PO Box 8129, 6700 EV Wageningen
Visiting Address:
"De Valk" ("Erfelijkheidsleer"),
Building 304,
Verbindingsweg 4, 6703 HC Wageningen
Room: 0052a
T: 0317 485786
F: 0317 483342
E-mail: Philip.deGroot at wur.nl
I:         http://humannutrition.wur.nl
           https://madmax.bioinformatics.nl
           http://www.nutrigenomicsconsortium.nl



-----Original Message-----
From: Benilton Carvalho [mailto:beniltoncarvalho at gmail.com] 
Sent: zaterdag 2 juni 2012 12:20
To: Jorge Miró [guest]
Cc: jorgma86 at gmail.com; bioconductor at r-project.org
Subject: Re: [BioC] XPS package working with Affymetrix GeneChip 1.0 ST at gene level

Another alternative, given that the affy package is not designed for this, is the oligo package.... b

On 2 June 2012 02:02, Jorge Miró [guest] <guest at bioconductor.org> wrote:
>
> I was wondering if there is some way of getting the XPS package working at gene level as I need to get the gene expression from some Rat Gene chips (RaGene 1.0 ST r4)that I will analyze.
>
> I tried to use the Affy package before but as far as I understand they need .CDF file to get working and I only have CLF and PBG files for my chips.
>
> Kind regards
> Jorge
>
>  -- output of sessionInfo():
>
> -
>
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> Sent via the guest posting facility at bioconductor.org.
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