[BioC] FW: ChipPeakAnno: 4-way venn diagram

[Wolfgang Huber]

Dear Julie

thanks. All my Venn diagram related needs are met by extant packages, so 
no need for further engineering from my side.

	Best wishes
	Wolfgang


Zhu, Lihua (Julie) scripsit 08/10/2012 03:25 PM:
> Wolfgang,
>
> Just to clarify whether you need to make 6-way venn diagram vi
> ChIPpeakAnno:makeVennDiagram or Vennerable (or future gplot) implementation
> suites your needs. Thanks!
>
> Best regards,
>
> Julie
>
>
> ------ Forwarded Message
> From: Heidi Dvinge <heidi at ebi.ac.uk>
> Date: Thu, 9 Aug 2012 20:04:30 +0100
> To: Lihua Julie Zhu <julie.zhu at umassmed.edu>
> Cc: "bioconductor at r-project.org" <bioconductor at r-project.org>
> Subject: Re: [BioC] ChipPeakAnno: 4-way venn diagram
>
>> Wolfgang,
>>
>> Looks really cool!
>>
>> It seems that drawVennDiagram in gplot only supports venn diagram up to 5
>> sets. ChIPpeakAnno::makeVennDiagram first finds the overlaps among
>> datasets,
>> then creates venn counts followed by calling the drawVennDiagram in gplot.
>> Should we get the gplot developer to implement the 6-way venn diagram?
>
> This is quite possibly the only example I've ever seen in an article of a
>> 5-way Venn diagram being justified. Not to mention funny :)
> However, if you really want to go down that route, then Vennerable does up
> to 9-way venns (afair).
>
> Best
> \Heidi
>
>> Thanks!
>>
>> Best regards,
>>
>> Julie
>>
>>
>> On 8/9/12 12:11 PM, "Wolfgang Huber" <whuber at embl.de> wrote:
>>
>>>
>>> Can we have banana-shaped 6-way Venn diagrams? Like here:
>>> http://www.nature.com/nature/journal/v488/n7410/full/nature11241.html#/f4
>>>
>>> Best wishes
>>> Wolfgang
>>>
>>> Aug/8/12 7:00 PM, Zhu, Lihua (Julie) scripsit::
>>>> Jose,
>>>>
>>>> The released version ChIPpeakAnno 2.4.0 in Bioconductor 2.10 supports
>>>> 4-way
>>>> venn diagram (
>>>> http://www.bioconductor.org/packages/release/bioc/html/ChIPpeakAnno.html)
>>>>
>>>>       source("http://bioconductor.org/biocLite.R")
>>>>       biocLite("ChIPpeakAnno")
>>>>
>>>> Please let me know if this works for you. Thanks!
>>>>
>>>> Best regards,
>>>>
>>>> Julie
>>>>
>>>> On 8/8/12 12:36 PM, "José LÓPEZ" <jose.lopez at umh.es> wrote:
>>>>
>>>>> Dear Julie,
>>>>>
>>>>> Although makeVennDiagram currently (v2.10) supports up to 3-way venn
>>>>> diagram
>>>>>
> (https://stat.ethz.ch/pipermail/bioconductor/attachments/20110502/9d4a25c5/a
>>>>> tt
>>>>> achment.pl
>>>>> ), I knew that you extended the function to 4-way in the dev version
>>>>> (v2.2.0).
>>>>> I need to make a 4-way venn diagram, so I would like to know whether
>>>>> it might be possible to install the dev version to try it.
>>>>>
>>>>> Thank you in advance for your time and help,
>>>>> Kind regards,
>>>>>
>>>>> Jose
>>>>>
>>>>>
>>>>> [[alternative HTML version deleted]]
>>>>>
>>>>> _______________________________________________
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>>>>
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>>>
>>
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>
>
>
> ------ End of Forwarded Message
>


-- 
Best wishes
	Wolfgang

Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber