[BioC] FW: ChipPeakAnno: 4-way venn diagram

[Zhu, Lihua (Julie)]

Wolfgang,

Just to clarify whether you need to make 6-way venn diagram vi
ChIPpeakAnno:makeVennDiagram or Vennerable (or future gplot) implementation
suites your needs. Thanks!

Best regards,

Julie

 
------ Forwarded Message
From: Heidi Dvinge <heidi at ebi.ac.uk>
Date: Thu, 9 Aug 2012 20:04:30 +0100
To: Lihua Julie Zhu <julie.zhu at umassmed.edu>
Cc: "bioconductor at r-project.org" <bioconductor at r-project.org>
Subject: Re: [BioC] ChipPeakAnno: 4-way venn diagram

> Wolfgang,
>
> Looks really cool!
>
> It seems that drawVennDiagram in gplot only supports venn diagram up to 5
> sets. ChIPpeakAnno::makeVennDiagram first finds the overlaps among
> datasets,
> then creates venn counts followed by calling the drawVennDiagram in gplot.
> Should we get the gplot developer to implement the 6-way venn diagram?

This is quite possibly the only example I've ever seen in an article of a
>5-way Venn diagram being justified. Not to mention funny :)
However, if you really want to go down that route, then Vennerable does up
to 9-way venns (afair).

Best
\Heidi

> Thanks!
>
> Best regards,
>
> Julie
>
>
> On 8/9/12 12:11 PM, "Wolfgang Huber" <whuber at embl.de> wrote:
>
>>
>> Can we have banana-shaped 6-way Venn diagrams? Like here:
>> http://www.nature.com/nature/journal/v488/n7410/full/nature11241.html#/f4
>>
>> Best wishes
>> Wolfgang
>>
>> Aug/8/12 7:00 PM, Zhu, Lihua (Julie) scripsit::
>>> Jose,
>>>
>>> The released version ChIPpeakAnno 2.4.0 in Bioconductor 2.10 supports
>>> 4-way
>>> venn diagram (
>>> http://www.bioconductor.org/packages/release/bioc/html/ChIPpeakAnno.html)
>>>
>>>      source("http://bioconductor.org/biocLite.R")
>>>      biocLite("ChIPpeakAnno")
>>>
>>> Please let me know if this works for you. Thanks!
>>>
>>> Best regards,
>>>
>>> Julie
>>>
>>> On 8/8/12 12:36 PM, "José LÓPEZ" <jose.lopez at umh.es> wrote:
>>>
>>>> Dear Julie,
>>>>
>>>> Although makeVennDiagram currently (v2.10) supports up to 3-way venn
>>>> diagram
>>>> 
(https://stat.ethz.ch/pipermail/bioconductor/attachments/20110502/9d4a25c5/a
>>>> tt
>>>> achment.pl
>>>> ), I knew that you extended the function to 4-way in the dev version
>>>> (v2.2.0).
>>>> I need to make a 4-way venn diagram, so I would like to know whether
>>>> it might be possible to install the dev version to try it.
>>>>
>>>> Thank you in advance for your time and help,
>>>> Kind regards,
>>>>
>>>> Jose
>>>>
>>>>
>>>> [[alternative HTML version deleted]]
>>>>
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>>
>
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