[BioC] Openening qPCR file from ABI

Philippe [guest] guest at bioconductor.org
Thu Aug 9 06:06:48 CEST 2012


Hi,

a colleague of mine gave me a 'sds' file, containing Real-Time PCR data from an ABI machine. I am currently trying to open it using the "ReadqPCR" package, but I am getting errors using it. So maybe someone knows another package/way which I could go to open this file? 

Best,
 Philippe

 -- output of sessionInfo(): 

R version 2.15.0 (2012-03-30)
Platform: i686-pc-linux-gnu (32-bit)

locale:
 [1] LC_CTYPE=de_DE.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=de_DE.UTF-8        LC_COLLATE=de_DE.UTF-8    
 [5] LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=de_DE.UTF-8   
 [7] LC_PAPER=C                 LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] ReadqPCR_1.2.0     affy_1.34.0        Biobase_2.16.0     BiocGenerics_0.2.0

loaded via a namespace (and not attached):
[1] affyio_1.24.0         BiocInstaller_1.4.7   preprocessCore_1.18.0
[4] zlibbioc_1.2.0 

--
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