[BioC] edgeR- data for case studies

Gordon K Smyth smyth at wehi.EDU.AU
Wed Aug 1 03:19:43 CEST 2012

Dear Franklin,

You don't say what version of edgeR you are using, but the latest 
version of the User's Guide


explains explicitly how to get every dataset for yourself.  The source of 
the dataset is explained at the start of every case study.

You have to download these datasets for yourself.  We don't ship them with 
the edgeR package.

Best wishes

> Date: Sun, 29 Jul 2012 19:15:27 +0000
> From: "Johnson, Franklin Theodore" <franklin.johnson at email.wsu.edu>
> To: "bioconductor at stat.math.ethz.ch" <bioconductor at stat.math.ethz.ch>
> Subject: [BioC] edgeR- data for case studies
> Hello,
> I am trying to repeat the edgeR process for section 3.3, 3.4 and 3.5 of 
> the edgeR user guide.
> However, in the edgeR data folder, labeled 'data', there are only four 
> .txt files. These .txt files are used to implement edgeR analysis the 
> SAGE experiment for sections 3.1 and 3.2 only.
> Is it possible to receive the data files used to develop the case 
> studies for sections 3.3, 3.4 and 3.4?
> Regards,
> Franklin

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