[BioC] Parallelizing Biostrings::pairwiseAlignment locally with multicore::mclapply problems?

[Martin Morgan]

On 04/17/2012 09:10 AM, Steve Lianoglou wrote:
> Aaaaannd ... please ignore this thread.
>
> I just restarted an R session w/ only my data, Biostrings, and
> multicore loaded and this warning is now gone.
>
> Still not sure how that warning was being emitted, but sometimes
> ignorance is bliss.

better to use parallel (included with R) than multicore (presumably 
legacy, as it's functionality has been folded in to parallel). Martin

>
> -steve
>
> On Tue, Apr 17, 2012 at 12:02 PM, Steve Lianoglou
> <mailinglist.honeypot at gmail.com>  wrote:
>> Sorry, I included the wrong package info from sessionInfo:
>>
>>> R version 2.15.0 (2012-03-30)
>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>>>
>>> other attached packages:
>>> Rmpi_0.5-9
>>> Biostrings_2.25.1
>>
>> Rmpi isn't really relevant and should have included:
>>
>> multicore_0.1-7
>>
>>
>> --
>> Steve Lianoglou
>> Graduate Student: Computational Systems Biology
>>   | Memorial Sloan-Kettering Cancer Center
>>   | Weill Medical College of Cornell University
>> Contact Info: http://cbio.mskcc.org/~lianos/contact
>
>
>


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