[BioC] Parallelizing Biostrings::pairwiseAlignment locally with multicore::mclapply problems?
mtmorgan at fhcrc.org
Tue Apr 17 20:00:36 CEST 2012
On 04/17/2012 09:10 AM, Steve Lianoglou wrote:
> Aaaaannd ... please ignore this thread.
> I just restarted an R session w/ only my data, Biostrings, and
> multicore loaded and this warning is now gone.
> Still not sure how that warning was being emitted, but sometimes
> ignorance is bliss.
better to use parallel (included with R) than multicore (presumably
legacy, as it's functionality has been folded in to parallel). Martin
> On Tue, Apr 17, 2012 at 12:02 PM, Steve Lianoglou
> <mailinglist.honeypot at gmail.com> wrote:
>> Sorry, I included the wrong package info from sessionInfo:
>>> R version 2.15.0 (2012-03-30)
>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>>> other attached packages:
>> Rmpi isn't really relevant and should have included:
>> Steve Lianoglou
>> Graduate Student: Computational Systems Biology
>> | Memorial Sloan-Kettering Cancer Center
>> | Weill Medical College of Cornell University
>> Contact Info: http://cbio.mskcc.org/~lianos/contact
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109
Telephone: 206 667-2793
More information about the Bioconductor