[BioC] BamStreamer

Thomas Girke thomas.girke at ucr.edu
Sat Apr 14 22:43:55 CEST 2012


The FastqStreamer function works great for processing FASTQ files (e.g.
adaptor/quality trimming) while keeping the memory footprint to a
minimum. An equivalent convenience function for line-wise streaming
through big BAM/SAM files would be a very useful addition too. Are there
any plans for this? 

Thanks,

Thomas



More information about the Bioconductor mailing list