[BioC] problem getting setNodeColorRule from RCytoscape to work

Tony tonyatvt at gmail.com
Tue Apr 3 17:19:42 CEST 2012


Paul Shannon <pshannon at ...> writes:

> 
> Hi Tony,
> 
> It looks like a version problem.   Could you send the results of sessionInfo 
()?  Include, too, please, the
> version of Cytoscape you are running, and which version of Jan Bot's 
CytoscapeRPC plugin.  I'll bet we can
> figure it out quickly.
> 
> - Paul
> 

Hi Paul,

Thanks so much for your timely response. Here is the sessioninfo():

> sessionInfo ()
R version 2.14.2 (2012-02-29)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=C                 LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] RCytoscape_1.4.4 XMLRPC_0.2-4     graph_1.32.0    

loaded via a namespace (and not attached):
[1] RCurl_1.6-7  tools_2.14.2 XML_3.9-4   
>

My Cytoscape version is 2.7.0, CytoscapeRPC is version 1.8 downloaded from 
http://chianti.ucsd.edu/cyto_web/plugins/displayplugininfo.php?name=CytoscapeRPC

Thank you for your help!



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