[BioC] Biomart server down?

[Fabrice Tourre]

Rhoda,

I have written to helpdesk at ensembl.org two days ago. But no response,
maybe need more time to wait.

Could you give me some words about why the items get by bioMart is not
the same as in the ftp
directory functional_genomics? If I can download the file from FTP
sites, it will be more easy than using biomaRt.

ftp://ftp.ensembl.org/pub/release-62/functional_genomics/homo_sapiens/
ftp://ftp.ensembl.org/pub/release-62/functional_genomics/homo_sapiens/RegulatoryFeatures_CD4.Chr22.gff.gz




On Mon, May 23, 2011 at 9:19 AM, Rhoda Kinsella <rhoda at ebi.ac.uk> wrote:
> Hi Fabrice
> Please contact helpdesk at ensembl.org who will be able to help you with your
> query.
> Regards
> Rhoda
>
>
> On 20 May 2011, at 21:06, Fabrice Tourre wrote:
>
>> Steffen,
>>
>> Thank you very much. It works.
>>
>> I am interesting to RegulatoryFeatures. I am strange why the region in
>> your example cannot be found in these files.
>>
>> ftp://ftp.ensembl.org/pub/release-62/functional_genomics/homo_sapiens/
>>
>> ftp://ftp.ensembl.org/pub/release-62/functional_genomics/homo_sapiens/RegulatoryFeatures_CD4.Chr22.gff.gz
>>
>> I just think the items get by bioMart will be the same as in the ftp
>> directory functional_genomics. But it is not. Do I have misunderstand
>> something?
>>
>> Thanks.
>>
>> On Fri, May 20, 2011 at 8:19 PM, Steffen Durinck
>> <durinck.steffen at gene.com> wrote:
>>>
>>> Steffen
>>
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>
> Rhoda Kinsella Ph.D.
> Ensembl Bioinformatician,
> European Bioinformatics Institute (EMBL-EBI),
> Wellcome Trust Genome Campus,
> Hinxton
> Cambridge CB10 1SD,
> UK.
>
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>