[BioC] Get all 3'utr and 5'utr region from GenomicFeatures

[James W. MacDonald]

Hi Fabrice,

On 5/24/2011 4:56 AM, Fabrice Tourre wrote:
> Dear list,
>
> How can I get all 3'utr and 5'utr region from GenomicFeatures of Human?
> There are fiveUTRsByTranscript, threeUTRsByTranscript methods in
> GenomicFeatures. But how can I get these regions?

hg19 <- makeFeatureDbFromUCSC(genome = "hg19", table = "refGene")
utr3 <- threeUTRsByTranscript(ref19)

Which seems pretty obvious to me, given the help pages for these functions.

It would be helpful if you could give us an indication of where you got 
stuck, and what in particular you didn't understand from the help pages, 
so we can improve our documentation.

Best,

Jim



>
> Thanks.
>
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-- 
James W. MacDonald, M.S.
Biostatistician
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
734-615-7826
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