[BioC] Ensembl mouse proteins

[Vincent Carey]

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On Sun, May 22, 2011 at 6:12 PM, Stefanie Carola Gerstberger
<scg74 at cornell.edu> wrote:
> Hi,
> I have tried to download the mouse protein sequences from Biomart Ensembl.  I only received 2203 protein sequences for mouse, including isoforms. The same results from downloading the Ensembl protein sequences through UCSC genome browser.I also encounter the problem for Xenopus tropicalis - only 4700 protein sequences. As reference point S.cerevisae has  6700 sequences in Ensembl biomart, human 87,000, Drosophila 22,000. Does anyone know why this is and how I can circumvene this problem to get a complete list of protein sequences for mouse and Xenopus?
> Thanks,
> Stefanie
>
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