[BioC] BAM format?

[Martin Morgan]

On 05/19/2011 04:33 PM, Brezo, Jelena wrote:
> Hi,
>
> Could you tell me if your Short Read Bioconductor can format results in BAM format?

Hi Jelena --

ShortRead does not output BAM; BAM are created when reads are aligned, 
and ShortRead does not do alignments.

Rsamtools can filter one BAM file to another, ?filterBam.

Best, Martin

>
> Thank you,
>
> Jelena
>
> Jelena Brezo, PhD
> Associate Director, CMDL
> City of Hope
> 1500 E. Duarte Rd., NW, Rm. 2238
> Duarte, CA 91010
> (626) 256-4673 ext. 64128
> jbrezo at coh.org<mailto:cfong at coh.org>
>
>
>
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