[BioC] Query Gene Ontology

[Wolfgang Huber]

  Hervé

have a look at the biomaRt package; or the org.Hs.egGO table in the
org.Hs.eg.db package [1] (if you work on human genes) or the other org.* 
packages (if work on another species).

[1] 
http://www.bioconductor.org/packages/release/data/annotation/html/org.Hs.eg.db.html

	Best wishes
	Wolfgang

LEMAITRE Hervé Université Paris Sud scripsit 05/18/2011 03:16 PM:
> Dear bioconductor-users,
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> I'm looking for a way to query the gene ontology in R like in the GO browser (AmiGO). I tried different packages (NCBI2R, GOsim ...) but I did not find a simple way to extract genes names associated to a GO term (i.e. myelination). Could you tell me if there is a way to do that?
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> Thanks,
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> Hervé
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> `·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´
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> Hervé Lemaître
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-- 


Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber