[BioC] [Fwd: Problem with DNAcopy plot function ??]

[Wolfgang Huber]

Dear Nat

I don't know this package in any detail, and other people will have more 
specific insights, but I think chances of someone being able to help you 
will increase if you

- post a small, self-contained, reproducible example
- provide the output of sessionInfo().

	Best wishes
	Wolfgang


nac scripsit 05/18/2011 11:02 PM:
> HI,
> I am using DNAcopy in order to plots my agilent CGHarrays (mouse)
> I have done the segmentation using the segment () function and now I
> want to plot my data using plot(). I know that chromosome 15 is
> duplicated in my samples.
> -With this configuration plot type=w ( plot all the genome)
> plot(segData, plot.type="w") , the chromosomes alternate in different
> colours and the duplicated chromosomes   are not in the right place ( it
> says chro7 is duplicated and I know it should be 15)
> -Interestingly when I plot per chromosome using the plot.type=s ,I don't
> have this problem and chromsome 15 is duplicated.
> I don't understand :( any idea ?
> thanks
> Nat
>
>
>
>


-- 


Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber