[BioC] connecting to ensembl

[Hervé Pagès]

Hi Stefan,

On 11-05-17 01:57 AM, Stefan Kroeger wrote:
> Does anybody else has problem with connecting to ensembl (since yesterday)?
>
> example code:
> myMart<- useMart("ensembl", dataset = "mmusculus_gene_ensembl")

Please show the output or the error message you get.

Yes we see problems in our daily build reports e.g.

 
http://bioconductor.org/checkResults/2.8/bioc-LATEST/GenomicFeatures/lamb1-checksrc.html

AFAICT for at least the last couple of days, biomaRt and all the
packages that depend on it seem to have problems to connect to the
ensembl Mart during the builds :-/

H.

>
> Best
>   Stefan
>
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-- 
Hervé Pagès

Program in Computational Biology
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