[BioC] gammaFitEM()
Richard C. McEachin
mceachin at umich.edu
Wed May 11 19:06:33 CEST 2011
Hello All,
I'd like to use gammaFitEM(), methylationCall(), and lumiMethyStatus
in the lumi package to distinguish methylated versus unmethylated
sites on the IlluminaHumanMethylation27k chip. I find these functions
in "Analyze Illumina Infinium methylation microarray data", but
nowhere else.
Session info et al., below. Any help?
Thanks, Rich McEachin
-------------------------------
> ??gammaFitEM
No help files found with alias or concept or title matching
gammaFitEM using fuzzy matching.
> sessionInfo()
R version 2.12.2 (2011-02-25)
Platform: x86_64-pc-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] lumi_2.2.1 Biobase_2.10.0
loaded via a namespace (and not attached):
[1] affy_1.28.1 affyio_1.18.0 annotate_1.28.1
[4] AnnotationDbi_1.12.1 DBI_0.2-5 grid_2.12.2
[7] hdrcde_2.15 KernSmooth_2.23-4 lattice_0.19-17
[10] MASS_7.3-11 Matrix_0.999375-46 methylumi_1.6.1
[13] mgcv_1.7-3 nlme_3.1-98 preprocessCore_1.12.0
[16] RSQLite_0.9-4 tools_2.12.2 xtable_1.5-6
More information about the Bioconductor
mailing list