[BioC] Reading Illumina files using Limma package

[Wei Shi]

Hi Rahul:

	I'm not sure what your question is. Can you provide more details about what you want to do so that you can get help?

Cheers,
Wei

On May 5, 2011, at 2:50 AM, Rahul Maurya wrote:

> Hello,
> 
> 
> 
> I am very new to R programming. I am trying to read the data from Genome
> Studio output using Limma package. I am able to do so by:
> 
> 
> 
>> x <- read.ilmn(files="path.for.probe", other.columns="Detection")
> 
> 
> 
>> x$other gives me the detection p values for all the samples for the
> respective genes
> 
> 
> 
> While x$genes gives me the gene name and symbol
> 
> 
> 
> I wanted to select all the genes with p values less than 0.1 (even if the p
> value of one sample for that particular gene is less than 0.1).
> 
> 
> 
> Can you help me with this?
> 
> 
> 
> Thanks,
> 
> Rahul Maurya
> 
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor


______________________________________________________________________
The information in this email is confidential and intend...{{dropped:6}}