[BioC] Fast way to find which gene a snp located.

[Zhu, Lihua (Julie)]

Fabrice,

You could try annotatePeakInBatch (output = "overlapping", maxgap=0,
multiple=TRUE) in ChIPpeakAnno package.

Best regards,

Julie


On 5/5/11 8:00 AM, "Fabrice Tourre" <fabrice.ciup at gmail.com> wrote:

> Dear list,
> 
> I have 8,000 snps. Each snp it has chromosome and genome position
> information. I want to know which genes these snps located separately.
> Does anyone have suggestion how can I get this information?
> 
> I think GenomicFeatures packages is hard to do this.
> 
> Thank you very much.
> 
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