[BioC] gene SOX6 in HT HG-U133A

James F. Reid james.reid at ifom-ieo-campus.it
Tue May 3 19:09:02 CEST 2011


Hi Andreas,

you should check which annotations they used at the time of study (or 
guess it, as it usually is the case).
It could very well be that a probeset used to map to SOX6 and now does not.

Best,
J.

On 05/03/2011 04:38 PM, Andreas Heider wrote:
> Hi bioconductor mailing list,
> I am confused about a publication that utilizes Affymetrix microarrays of
> type "HT HG-U133A". In this study they present data about SOX6, but as far
> as I could find information, there is no probe/probeset in HT HG-U133A that
> detects this. So how did they do this? Is there some non-affy annotation
> that holds this information? Are there custom CDFs that include SOX6? If so,
> I could use this in my own analysis.
>
> The study I'm referring to is "Reference Maps of Human ES and iPS Cell
> Variation Enable High-Throughput Characterization of Pluripotent Cell
> Lines".
>
> Thanks in advance, Andreas
>
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