[BioC] Problem with oneChannelGUI

[Steve Lianoglou]

Hi,

On Mon, Mar 28, 2011 at 9:35 AM, Martin Morgan <mtmorgan at fhcrc.org> wrote:
> On 03/28/2011 06:24 AM, Guido Leoni wrote:
>>
>> I've an update about my problem:
>> running  in oneChannelGUI an analysis on a set of 3' arrays and requesting
>> a
>> gcrma normalization with apt: everything ends fine ....
>> Need I to reinstall R ?
>
> The error suggests a mismatch between the compiled code in a package and the
> support libraries available on your computer. The most likely cause is that
> the package was compiled ('installed') against a different set of libraries
> than are currently available. Likely you copied libraries from one location
> to another. You can try to correct this problem one package at a time, but
> this is tedious and error-prone.
>
> Of course if this is right before a deadline then you will want to proceed
> with care, so as not to end up with a system that is completely unusable. It
> might also be worth while to wait a little; perhaps I have mis-diagnosed the
> problem and someone else will provide a more accurate solution.

I guess a more direct question to help smoke out the problem that
Martin is thinking of, is:

How did you "reinstall the old packages" after your update?

Did you do it through biocLite, or did you just copy the packages in
your older library folder to the new install?

-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact