[BioC] Problem with oneChannelGUI

[Martin Morgan]

On 03/28/2011 06:24 AM, Guido Leoni wrote:
> I've an update about my problem:
> running  in oneChannelGUI an analysis on a set of 3' arrays and requesting a
> gcrma normalization with apt: everything ends fine ....
> Need I to reinstall R ?

The error suggests a mismatch between the compiled code in a package and 
the support libraries available on your computer. The most likely cause 
is that the package was compiled ('installed') against a different set 
of libraries than are currently available. Likely you copied libraries 
from one location to another. You can try to correct this problem one 
package at a time, but this is tedious and error-prone.

Of course if this is right before a deadline then you will want to 
proceed with care, so as not to end up with a system that is completely 
unusable. It might also be worth while to wait a little; perhaps I have 
mis-diagnosed the problem and someone else will provide a more accurate 
solution.

Martin

> Thanks again
>
> 2011/3/28 Martin Morgan<mtmorgan at fhcrc.org>
>
>> On 03/28/2011 05:36 AM, Guido Leoni wrote:
>>
>>> Dear List
>>> I updated my R version to 2.12 and reinstalled all the oldest packages.
>>> Now I'm trying to use oneChannelGUI in order to analyze some gene 1.0 St
>>>   microarrays.
>>> Every time I try to normalize my data with the apt of affymetrix I
>>> retrieve
>>> the following error
>>>
>>> apt-probeset-summarize: relocation error: /lib/libnss_files.so.2: symbol
>>> __rawmemchr, version GLIBC_2.2.5 not defined in file libc.so.6 with link
>>> time reference
>>>
>>> OnechannelGUI worked fine with R 2.10...
>>> Please can someone give to me any suggestion?
>>>
>>
>> It sounds like the update was not done correctly. I would suggest starting
>> with a new R installation, and using biocLite() to install the packages that
>> you need.
>>
>> http://bioconductor.org/install/
>>
>> Martin
>>
>>   thank you very much
>>> Guido Leoni
>>>
>>>         [[alternative HTML version deleted]]
>>>
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>>
>>
>> --
>> Computational Biology
>> Fred Hutchinson Cancer Research Center
>> 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109
>>
>> Location: M1-B861
>> Telephone: 206 667-2793
>>
>
>
>


-- 
Computational Biology
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109

Location: M1-B861
Telephone: 206 667-2793