[BioC] Problem with oneChannelGUI
mtmorgan at fhcrc.org
Mon Mar 28 15:35:04 CEST 2011
On 03/28/2011 06:24 AM, Guido Leoni wrote:
> I've an update about my problem:
> running in oneChannelGUI an analysis on a set of 3' arrays and requesting a
> gcrma normalization with apt: everything ends fine ....
> Need I to reinstall R ?
The error suggests a mismatch between the compiled code in a package and
the support libraries available on your computer. The most likely cause
is that the package was compiled ('installed') against a different set
of libraries than are currently available. Likely you copied libraries
from one location to another. You can try to correct this problem one
package at a time, but this is tedious and error-prone.
Of course if this is right before a deadline then you will want to
proceed with care, so as not to end up with a system that is completely
unusable. It might also be worth while to wait a little; perhaps I have
mis-diagnosed the problem and someone else will provide a more accurate
> Thanks again
> 2011/3/28 Martin Morgan<mtmorgan at fhcrc.org>
>> On 03/28/2011 05:36 AM, Guido Leoni wrote:
>>> Dear List
>>> I updated my R version to 2.12 and reinstalled all the oldest packages.
>>> Now I'm trying to use oneChannelGUI in order to analyze some gene 1.0 St
>>> Every time I try to normalize my data with the apt of affymetrix I
>>> the following error
>>> apt-probeset-summarize: relocation error: /lib/libnss_files.so.2: symbol
>>> __rawmemchr, version GLIBC_2.2.5 not defined in file libc.so.6 with link
>>> time reference
>>> OnechannelGUI worked fine with R 2.10...
>>> Please can someone give to me any suggestion?
>> It sounds like the update was not done correctly. I would suggest starting
>> with a new R installation, and using biocLite() to install the packages that
>> you need.
>> thank you very much
>>> Guido Leoni
>>> [[alternative HTML version deleted]]
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Telephone: 206 667-2793
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