[BioC] affylmGUI annotations

[Richard Friedman]

Ed,

 	I know what I am about to suggest soundds awkward but you can 
donwload the annotation from the affy web site, sort your outout by 
accesion #s and paste in the annotation aligned by accession number and
then resort by p-value.

With hopes that the above helps,
Rich


On Tue, 23 Aug 2011, Ed Siefker wrote:

> I am trying to analyze data from Affymetrix Mouse Gene 1.0 ST arrays.
> I am using R 2.13.0 with affylmGUI and all its dependencies freshly
> installed.  I have analyzed my data exactly as described in the
> Estrogen Worked Example from the documentation.
>
> I get no annotations on my toptable, just probeset ids.  I don't see
> any error messages about being unable to find or download annotations,
> or any indication that it has tried to annotate the data at all.
>
> Reading the documentation, the only other reference to annotation that
> I can find points me to http://www.bioconductor.org/data/metaData.html
> which does not exist.  How do I proceed from here?
>
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-- 
------------------------------------------------------------
Richard A. Friedman, PhD
Associate Research Scientist
Herbert Irving Comprehensive Cancer Center
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