[BioC] GOstats with Reactome database?

J.delasHeras at ed.ac.uk J.delasHeras at ed.ac.uk
Mon Aug 15 19:21:20 CEST 2011

Quoting Martin Morgan <mtmorgan at fhcrc.org> on Mon, 15 Aug 2011 10:11:50 -0700:

> On 08/15/2011 05:48 AM, J.delasHeras at ed.ac.uk wrote:
>> Dear all,
>> with the demise of KEGG (well, at least without subscription), I was
>> wondering whether there are any plans to get GOstats working with the
>> Reactome database, or whether there is an "easy" way to persuade GOstats
>> to work with it.
> Hi Jose --
> Yes, we intend to revise the GOstats, GSEABase, and perhaps other  
> packages to work more flexibly with Reactome & other data base  
> packages. Whether this will be accomplished this release is not clear.
> Martin
>> Any ideas?
>> Jose

Hi Martin,

that's great news. I have become a bit of a fan of GOstats recently  
and would love to use a similar approach with other databases.

Very grateful for all your work.


Dr. Jose I. de las Heras                      Email: J.delasHeras at ed.ac.uk
The Wellcome Trust Centre for Cell Biology    Phone: +44 (0)131 6507090
Institute for Cell & Molecular Biology        Fax:   +44 (0)131 6507360
Swann Building, Mayfield Road
University of Edinburgh
Edinburgh EH9 3JR

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