[BioC] GOstats with Reactome database?

Martin Morgan mtmorgan at fhcrc.org
Mon Aug 15 19:11:50 CEST 2011

On 08/15/2011 05:48 AM, J.delasHeras at ed.ac.uk wrote:
> Dear all,
> with the demise of KEGG (well, at least without subscription), I was
> wondering whether there are any plans to get GOstats working with the
> Reactome database, or whether there is an "easy" way to persuade GOstats
> to work with it.

Hi Jose --

Yes, we intend to revise the GOstats, GSEABase, and perhaps other 
packages to work more flexibly with Reactome & other data base packages. 
Whether this will be accomplished this release is not clear.


> Any ideas?
> Jose

Computational Biology
Fred Hutchinson Cancer Research Center
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Location: M1-B861
Telephone: 206 667-2793

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