[BioC] Fwd: problems when trying to use biomaRt
seandavi at gmail.com
Wed Mar 17 11:50:42 CET 2010
Theres is no error message at all, simply R is not responding anymore.
when loading library(biomaRt) the prompt sign appears again, and you
can already run basic things like:
When I run sessionInfo() I get this:
R version 2.10.1 (2009-12-14)
 LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
 LC_MONETARY=English_United States.1252 LC_NUMERIC=C
 LC_TIME=English_United States.1252
attached base packages:
 stats graphics grDevices utils datasets methods base
other attached packages:
loaded via a namespace (and not attached):
 RCurl_1.3-1 XML_2.6-0
Thanks in advance,
On Wed, Mar 17, 2010 at 11:20 AM, Sean Davis <seandavi at gmail.com> wrote:
> On Wed, Mar 17, 2010 at 6:12 AM, Juan Pablo Fededa <jpfededa at gmail.com> wrote:
> > Dear bioconductor-help contributors,
> > I'm trying to use biomaRt package in R, and when I run the last one of the
> > next two lines, the R GUI crashes:
> > library("biomaRt")
> > ensembl = useMart("ensembl", dataset = "hsapiens_gene_ensembl")
> > I'm using R 2.10.1 and the latest versions of biomaRt, XML ( downloaded from
> > CRAN-extras) and RCurl.
> > Do you have any idea of what can I change to make it work?
> Hi, Juan. There is not enough information here to help you. Please
> include the error message if you can and the output of sessionInfo()
> after loading biomaRt.
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