[BioC] AgiMicroRna package is not available at bioconductor or not in active form???

[Sean Davis]

On Wed, Mar 17, 2010 at 5:17 AM, neeraj rana <kushrn at gmail.com> wrote:
>
> hi sean,
>
> the internet is working,and i turned off the firewall also..but still i am
> facing the same the problems.

Hi, Neeraj.  Please keep replies on the list so that you can get the
best help possible.

Turning off your computer firewall is not likely to solve a problem if
you are behind a corporate firewall.  You may need to get a local
administrator to help there, as I think the bioconductor site is up
right now.

Sean

> On Wed, Mar 17, 2010 at 2:40 PM, Sean Davis <seandavi at gmail.com> wrote:
>>
>> On Wed, Mar 17, 2010 at 3:50 AM, neeraj rana <kushrn at gmail.com> wrote:
>> > hi
>> >
>> > i install the R package R.2.10.0 for windows.And then i tried to install
>> > bioconductor package ,but it is not installing.It's showing this error
>> >
>> >> source("http://bioconductor.org/biocLite.R")
>> > Error in file(file, "r", encoding = encoding) :
>> >   cannot open the connection
>> > In addition: Warning message:
>> > In file(file, "r", encoding = encoding) :
>> >   unable to connect to 'bioconductor.org' on port 80.
>>
>> Hi, Neeraj.
>>
>> Are you behind a firewall?  Is your network connection working?
>>
>> Sean
>>
>> > On Tue, Mar 16, 2010 at 4:06 PM, Sean Davis <seandavi at gmail.com> wrote:
>> >>
>> >> On Tue, Mar 16, 2010 at 6:24 AM, neeraj rana <kushrn at gmail.com> wrote:
>> >> > hi,
>> >> >
>> >> > i need to analyse Agilent microrna microarray by the package
>> >> > AgiMicroRna
>> >> > ,i
>> >> > tried it to intstall but the msz  came
>> >> >
>> >> >> source("http://bioconductor.org/biocLite.R")
>> >> > Warning messages:
>> >> > 1: In safeSource() : Redefining ‘biocinstall’
>> >> > 2: In safeSource() : Redefining ‘biocinstallPkgGroups’
>> >> > 3: In safeSource() : Redefining ‘biocinstallRepos’
>> >> >>     biocLite("AgiMicroRna")
>> >> > Using R version 2.9.2, biocinstall version 2.4.13.
>> >> > Installing Bioconductor version 2.4 packages:
>> >> > [1] "AgiMicroRna"
>> >> > Please wait...
>> >> >
>> >> > Warning message:
>> >> > In getDependencies(pkgs, dependencies, available, lib) :
>> >> >  package ‘AgiMicroRna’ is not available
>> >> >
>> >> > Please let me know whethr it is available or not,or any alternative
>> >> > ??
>> >>
>> >> Hi, Neeraj.
>> >>
>> >> AgiMicroRna became available only in Bioconductor 2.5, which
>> >> corresponds to R-2.10.  You will need to upgrade your R to the newest
>> >> version in order to use AgiMicroRna.
>> >>
>> >> Sean
>> >
>> >
>
>