[BioC] KEGGgraph fails on a KEGG XML file

[Rajarshi Guha]

Indeed. With the latest XML package it works fine

On Mar 7, 2010, at 5:36 AM, Jitao David Zhang wrote:

> Hi dear Rajarshi Guha,
>
>   This is probably caused by an oder version of XML package. Please  
> update it.
>
>   Best wishes,
> David
>
> 2010/3/5 Rajarshi Guha <rajarshi.guha at gmail.com>
> Hi, I'm using KEGGgraph on R 2.9.0 (64 bit) on OS X 10.5.7. When
> trying to read in the KEGG XML for hsa00051, I get the following
> message:
>
> > parseKGML2Graph('hsa00051.xml', genesOnly=FALSE)
> Error in UseMethod("xmlAttrs", node) :
>  no applicable method for "xmlAttrs"
>
>
> Has anybody seen this before?
>
> --
> Rajarshi Guha
> NIH Chemical Genomics Center
>
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>
>
> -- 
> Jitao David Zhang
> Biological Statistics and Computational Biology Ph.D.
> Division of Molecular Genome Analysis
> DKFZ, Heidelberg D-69120, Germany
>
> http://www.NextBioMotif.com/

----------------------------------------------------
Rajarshi Guha        | NIH Chemical Genomics Center
http://www.rguha.net | http://ncgc.nih.gov