[BioC] KEGGgraph fails on a KEGG XML file

Chris Fjell cfjell at interchange.ubc.ca
Fri Mar 5 21:13:43 CET 2010

   I've used KEGGgraph successfully on OS X and I recall seeing this.
   Can you give a link to the

file and I'll try to replicate the error.

Remeber to give your session info as per the posting guidelines.

   Rajarshi Guha wrote:

Hi, I'm using KEGGgraph on R 2.9.0 (64 bit) on OS X 10.5.7. When
trying to read in the KEGG XML for hsa00051, I get the following


parseKGML2Graph('hsa00051.xml', genesOnly=FALSE)

Error in UseMethod("xmlAttrs", node) :
  no applicable method for "xmlAttrs"

Has anybody seen this before?


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