[BioC] Loading ontologies from OBO foundry?

stubben stubben at lanl.gov
Wed Jul 28 00:17:16 CEST 2010

Is there anyway to load ontologies from the OBO foundry directly into  
R?     For example,  I'd like to be able to load  one of the  
Environment Ontology formats (read.obo?) and then run some simple  
queries like listing all terms assigned under the  "fermented food"   

There seems to be alot of different graph classes in ontoTools and  
other R packages, and lots of ways to query these structures, so I'm  
not sure where to start.



Chris Stubben

Los Alamos National Lab
BioScience Division
MS M888
Los Alamos, NM 87545

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