[BioC] Enrichment analysis for chromosomes

Martin Morgan mtmorgan at fhcrc.org
Tue Jul 27 16:29:49 CEST 2010


On 07/27/2010 06:56 AM, Bhatti, Gaurav wrote:
> Hi
> 
> I have a set of differentially expressed genes from a microarray
> experiment. I want to to do enrichment analysis based on chromosomes.
> Please suggest a package or another strategy.

Hi Gaurav -- the 'Category' package has a vignette describing this, and
the subtleties involved.

  http://140.107.3.23/packages/release/bioc/html/Category.html

Also the references in the vignette and

http://bioinformatics.oxfordjournals.org/cgi/content/abstract/24/22/2586

Martin

> 
> Gaurav Bhatti
> 
> [[alternative HTML version deleted]]
> 
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-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
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