[BioC] Enrichment analysis for chromosomes
Martin Morgan
mtmorgan at fhcrc.org
Tue Jul 27 16:29:49 CEST 2010
On 07/27/2010 06:56 AM, Bhatti, Gaurav wrote:
> Hi
>
> I have a set of differentially expressed genes from a microarray
> experiment. I want to to do enrichment analysis based on chromosomes.
> Please suggest a package or another strategy.
Hi Gaurav -- the 'Category' package has a vignette describing this, and
the subtleties involved.
http://140.107.3.23/packages/release/bioc/html/Category.html
Also the references in the vignette and
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/24/22/2586
Martin
>
> Gaurav Bhatti
>
> [[alternative HTML version deleted]]
>
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--
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
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