[BioC] Error loading Affymetrix Human Genome U133plus2 Set annotation data

[Lei Huang]

Hi Seth,

Thank you for the prompt reply. I reinstalled R and Bioconductor to their
latest releases and the problem is solved.

Cheers!

Lei

On Mon, November 16, 2009 7:12 pm, Seth Falcon wrote:
> Hi Lei,
>
> On 11/16/09 1:22 PM, Lei Huang wrote:
>> I received an error message when trying to load library(hgu133plus2.db)
>
>>> library(hgu133plus2.db)
>> Loading required package: AnnotationDbi
>> Loading required package: Biobase
>>
>> Welcome to Bioconductor
>>
>>    Vignettes contain introductory material. To view, type
>>    'openVignette()'. To cite Bioconductor, see
>>    'citation("Biobase")' and for packages 'citation(pkgname)'.
>>
>> Loading required package: DBI
>> Error in sqliteFetch(rs, n = -1, ...) :
>>    RSQLite driver: (RS_SQLite_fetch: failed first step: disk I/O error)
>> Error : .onLoad failed in 'loadNamespace' for 'hgu133plus2.db'
>> Error: package/namespace load failed for 'hgu133plus2.db'
>
> Hmm, that error looks like it is coming from SQLite.  A bit difficult to
> debug from here, but a few suggestions:
>
> 1. Try reinstalling this package using biocLite.  Possibly try
> installing the package to a different package library (see .libPaths()).
>
> 2. Consider upgrading your R and Bioc packages to the latest release.
>
>
> + seth
> --
> Seth Falcon
> Program in Computational Biology | Fred Hutchinson Cancer Research Center
>
>