[BioC] Error loading Affymetrix Human Genome U133plus2 Set annotation data
sfalcon at fhcrc.org
Tue Nov 17 02:12:19 CET 2009
On 11/16/09 1:22 PM, Lei Huang wrote:
> I received an error message when trying to load library(hgu133plus2.db)
> Loading required package: AnnotationDbi
> Loading required package: Biobase
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> Loading required package: DBI
> Error in sqliteFetch(rs, n = -1, ...) :
> RSQLite driver: (RS_SQLite_fetch: failed first step: disk I/O error)
> Error : .onLoad failed in 'loadNamespace' for 'hgu133plus2.db'
> Error: package/namespace load failed for 'hgu133plus2.db'
Hmm, that error looks like it is coming from SQLite. A bit difficult to
debug from here, but a few suggestions:
1. Try reinstalling this package using biocLite. Possibly try
installing the package to a different package library (see .libPaths()).
2. Consider upgrading your R and Bioc packages to the latest release.
Program in Computational Biology | Fred Hutchinson Cancer Research Center
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