[BioC] CellHTS Replicates Missing

[Florian Hahne]

Hi Becky,
missing replicates should still work, so this is definitely a bug. Could 
you send me all the files needed to reproduce the problem, and also all 
the code. I will fix this asap and will let you know once the new 
version is available.
Florian

Becky Saunders wrote:
> Hello there,
>
>  
>
> Sorry if this question has already been answered.
>
>  
>
> I have been using CellHTS2 for a while now but have recently upgraded to
> R version 2.9.1 and CellHTS2 version 2.8.1.
>
>  
>
> Using my previous version I could miss replicates from the plate list
> file without generating an error - for example :
>
>  
>
> Filename             Plate      Replicate
>
> plate_1_1.txt     1              1
>
> plate_1_2.txt     1              2
>
> plate_1_3.txt     1              3
>
> plate_2_1.txt     2              1
>
> plate_2_2.txt     2              2
>
> plate_2_3.txt     2              3
>
> plate_3_2.txt     3              2
>
> plate_3_3.txt     3              3
>
>  
>
> Where plate 3, replicate 1 is missing. However, with my current version
> this generates the following error:
>
>  
>
> Error in data.frame(title = title, shortTitle = title, thumbnail = img,
> :  arguments imply differing number of rows: 3, 2 . 
>
>  
>
> I have tried it also when missing replicate 2 and replicate 3 and I
> still get the error.
>
>  
>
> Can I still analyse plates with a different number of replicates? 
>
>  
>
> All the plate data seems to be fine and when I include all 3 replicates
> I do not get any errors.
>
>  
>
> Many Thanks,
>
>  
>
> Becky Saunders
>
>  
>
>  
>
> --
>
> Dr Rebecca Saunders
>
> High Throughput Screening Laboratory - Cancer Research UK
>
> Tel No. +44 (0)207 269 3159
>
> Fax No. +44 (0)207 269 3581
>
>  
>
>
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-- 
Florian Hahne, PhD
Computational Biology Program
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
PO Box 19024
Seattle, Washington 98109-1024
206-667-3148
fhahne at fhcrc.org