[BioC] Agilent and Limma

[Peter Robinson]

Dear conductors,

we are currently trying to see if we can reproduce the results of 
GeneSpring analysis using Bioconductor/limma and we are wondering what 
the best interface is, i.e., at what point in the analysis to input the 
Agilent data (image, raw, Gene-Spring-normalized), and how to include 
the quality (present/absent) calls into the analysis. The package 
Agi4x44PreProcess does not seem to be being actively maintained (?). I 
wonder if anyone on this list would be willing to share 
scripts/experiences on this.

THanks Peter

-- 
Dr. med. Peter N. Robinson, MSc.
Institut für Medizinische Genetik
Universitätsklinikum Charite
Humboldt-Universität
Augustenburger Platz 1
13353 Berlin
Germany
voice: 49-30-450569124
fax:   49-30-450569915
email: peter.robinson at charite.de
http://compbio.charite.de/
http://www.human-phenotype-ontology.org