[BioC] LIMMA Sort problem

[Wang, Jixin]

Hi Jim,
Thanks a lot for the kind help. I had solved the problem by using of sort=”none” option. 
Best Regards,

Wang

----- Original Message -----
From: "James W. MacDonald" <jmacdon at med.umich.edu>
To: "Jixin Wang" <jixinwang at neo.tamu.edu>
Cc: bioconductor at stat.math.ethz.ch
Sent: Tuesday, November 4, 2008 12:15:22 PM GMT -06:00 US/Canada Central
Subject: Re: [BioC] LIMMA Sort problem

If you don't want limma to sort things, then I believe what you want is 
write.fit().

Best,

Jim


Wang, Jixin wrote:
> Dear All,
> I have one question about the consistence between topTable output with GPR file. In my GPR file, I have several columns containing the annotation information associated with the probes. 
> Can I get differential expression gene list according to GPR file without sort so that I can copy and paste the column gene info from GPR file into toptable?   I don’t want LIMMA to sort out the genes for me.   
> Many thanks.
> Best Regards,
> 
> Wang
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
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