[BioC] get probe level intensity from Affymetrix Exon Array platform

[shirley zhang]

Hi Jim,

Thanks for your help. Can you also tell me how to get all of the
background probe and positive/negative control probe data using the
exonmap package?

Shirley

On Mon, Mar 17, 2008 at 10:14 AM, James W. MacDonald
<jmacdon at med.umich.edu> wrote:
> Hi Shirley,
>
> You can get the probe-level data using the exonmap package.
>
> Best,
>
> Jim
>
>
>
>
> shirley zhang wrote:
> > Dear Bioconductor,
> >
> >  I usually obtain exon-level/gene-level signal using Plier/RMA
> > implemented in Affymetrix's Expression Console, however there is no
> > way to get probe level intensity from it. Does anybody know how to get
> > probe level intensity from Affymetrix Exon Array platform?
> >
> > Thanks,
> > Shirley
> >
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> --
> James W. MacDonald, M.S.
> Biostatistician
> Affymetrix and cDNA Microarray Core
> University of Michigan Cancer Center
> 1500 E. Medical Center Drive
> 7410 CCGC
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>