[BioC] problem with arrayQuality in OSX 10.5
"M. Gonzalo Claros Díaz"
claros at uma.es
Thu Mar 13 11:34:17 CET 2008
Hi:
I was using arrayQuality library for months in R in mac OS 10.4
without problems. Now I have an Intel mac with OS 10.5 and I have
problems with arrayQuality functions: they do not start. This is the
transcription:
gpQuality(RGdata$targets$FileName)
[1] "Starting gpQuality..."
Error en X11(paste("png::", filename, sep = ""), width, height,
pointsize, :
no fue posible iniciar el dispositivo PNG
Además: Warning message:
In png(filename = "qualPlot.50-51/Slid50-COM3-LAT5Total Baja-A.png", :
no fue posible abrir el archivo PNG 'qualPlot.50-51/Slid50-COM3-
LAT5Total Baja-A.png'
traceback()
3: png(filename = "qualPlot.50-51/Slid50-COM3-LAT5Total Baja-A.png",
width = 800, height = 600, units = "px", pointsize = 12,
bg = "white", res = NA)
2: do.call(dev, maDotsMatch(maDotsDefaults(opt, c(list(filename =
plotname),
plotdef$dev)), formals(args(dev))))
1: gpQuality(RGdata$targets$FileName)
On the contrary, a command like
maQualityPlot(RGdata)
works perfectly.
¿Do someone have any idea?
Gonzalo
sessionInfo()
R version 2.6.2 (2008-02-08)
i386-apple-darwin8.10.1
locale:
es_ES.UTF-8/es_ES.UTF-8/es_ES.UTF-8/C/es_ES.UTF-8/es_ES.UTF-8
attached base packages:
[1] grid tools stats graphics grDevices utils
datasets methods base
other attached packages:
[1] statmod_1.3.1 arrayQuality_1.14.0 RColorBrewer_1.0-2
gridBase_0.4-3
[5] hexbin_1.12.0 lattice_0.17-4 convert_1.14.0
Biobase_1.16.3
[9] marray_1.16.0 limma_2.12.0
--
«Donde me he equivocado, soy el único responsable; donde no,
el mérito es de los que me han ayudado»
================================================================
M. Gonzalo CLAROS claros at uma.es
Dpt. Biología Molecular y Bioquímica
Facultad de Ciencias Fax: (+34) 95 213 2041
Universidad de Málaga Tel: (+34) 95 213 7284
E-29071 Málaga (Spain) http://www.bmbq.uma.es/fmp/
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