[BioC] BSgenome package - add the bos taurus genome

[Herve Pages]

Hi João,

João Fadista wrote:
> Yes, it´s that version. Thanks a lot. When you add the package please let me know.

I've just added BSgenome.Btaurus.UCSC.bosTau3 to our public repository (for
BioC devel only). From R 2.7.0:

  > library(BSgenome)
  > available.genomes()
   [1] "BSgenome.Amellifera.UCSC.apiMel2"
   [2] "BSgenome.Athaliana.TAIR.01222004"
   [3] "BSgenome.Btaurus.UCSC.bosTau3"
   [4] "BSgenome.Celegans.UCSC.ce2"
   [5] "BSgenome.Dmelanogaster.BDGP.Release5"
   [6] "BSgenome.Dmelanogaster.FlyBase.r51"
   [7] "BSgenome.Dmelanogaster.UCSC.dm2"
   [8] "BSgenome.Ggallus.UCSC.galGal3"
   [9] "BSgenome.Hsapiens.UCSC.hg16"
  [10] "BSgenome.Hsapiens.UCSC.hg17"
  [11] "BSgenome.Hsapiens.UCSC.hg18"
  [12] "BSgenome.Mmusculus.UCSC.mm6"
  [13] "BSgenome.Mmusculus.UCSC.mm7"
  [14] "BSgenome.Mmusculus.UCSC.mm8"
  [15] "BSgenome.Mmusculus.UCSC.mm9"
  [16] "BSgenome.Scerevisiae.UCSC.sacCer1"

Install as usual with biocLite():

  > source("http://bioconductor.org/biocLite.R")
  > biocLite("BSgenome.Btaurus.UCSC.bosTau3")

It's big (736.7 Mb) so depending on your connection it might take a while.
Let me know in case of problems.

Cheers,
H.