[BioC] custom CDF with GC-RMA

[James W. MacDonald]

You want the matchprobes package. See ?makeProbePackage.

Best,

Jim



iromashk at student.umass.edu wrote:
> Dear Bioconductor community,
>    We are using a custom expression array design from affy. We were able to use
> their cdf file for bioconductor analysis with RMA, but GC-RMA does not seem to
> function because of missing probe sequence information. We have the probe
> information in a text file. Is there a guide to loading the probe sequence
> information for GC-RMA analysis?
> 
> Best,
> -Igor
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623