[BioC] Howto Get GO/Gene-names of GEO-Soft Probe-names

Gundala Viswanath gundalav at gmail.com
Sun Jul 27 09:39:38 CEST 2008


Dear all,

I have the following probe names selected from a dataset (GDS592),
taken from GEO (SOFT format).

gnf1m29878_a_at
gnf1m13556_at
gnf1m09610_a_at
gnf1m11352_a_at
gnf1m26036_at
...more...

And I want to get the GO term and Official Gene Name from these
probe names.

Is there a way to do it?

I tried these two Bioconductor commands but fail.

> library("hgu95av2.db")
> hgu95av2SYMBOL[["gnf1m2978_a_at"]]
NULL
> hgu95av2GO[["gnf1m2978_a_at"]]
NULL

Please advice.

- Gundala Viswanath
Jakarta - Indonesia



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