[BioC] How to map a Sentrix BeadChip ID to BioC annotation package?

Christian Kohler Christian.Kohler at klinik.uni-regensburg.de
Thu Jul 10 16:29:46 CEST 2008


Dear list,

is there a way to map a given Sentrix BeadChip ID to its corresponding
Bioconductor annotation package?

For example, all samples originating from a human Sentrix-6 V2 BeadChip
have the SentrixMatrixID '1888849019'.
As our group runs a microarray analysis pipeline, it would be convenient
to automatically use the adequate Bioconductor annotation package (e.g.
illuminaHumanv1.db), given the SentrixMatrixID.

Thanks for any help.

Christian


-- 

Christian Kohler
Institute of Functional Genomics
Computational Diagnostics
University of Regensburg (BioPark I)
D-93147 Regensburg (Germany)

Tel. +49 941 943 5055
Fax  +49 941 943 5020
christian.kohler at klinik.uni-regensburg.de



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