[BioC] Storey and Tibshirani FDR

alex lam (RI) alex.lam at bbsrc.ac.uk
Wed Jan 30 11:57:48 CET 2008


Hi Daniel, 

Storey's group released a package in CRAN called qvalue. 

Cheers,
Alex

--------------------------------------------
Alex C. Lam
Roslin Institute (Edinburgh)
Midlothian
EH25 9PS
United Kingdom
Tel: +44 131 5274471

Roslin Institute is a company limited by guarantee, registered in
Scotland (registered number SC157100) and a Scottish Charity (registered
number SC023592). Our registered office is at Roslin, Midlothian, EH25
9PS. VAT registration number 847380013.

The information contained in this e-mail (including any attachments) is
confidential and is intended for the use of the addressee only.   The
opinions expressed within this e-mail (including any attachments) are
the opinions of the sender and do not necessarily constitute those of
Roslin Institute (Edinburgh) ("the Institute") unless specifically
stated by a sender who is duly authorised to do so on behalf of the
Institute



-----Original Message-----
From: bioconductor-bounces at stat.math.ethz.ch
[mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Daniel
Brewer
Sent: 30 January 2008 10:16
To: bioconductor at stat.math.ethz.ch
Subject: [BioC] Storey and Tibshirani FDR

I am trying to recreate some results from an external microarray dataset
and they use Storey and Tibshirani's False Discovery Rate for multiple
testing correction.  Is this implemented in Bioconductor at all?  Having
a quick glance at the paper it looks like it is related to Benjamin
Hochberg but not quite the same.

Thanks

--
**************************************************************
Daniel Brewer, Ph.D.

Institute of Cancer Research
Molecular Carcinogenesis
Email: daniel.brewer at icr.ac.uk
**************************************************************

The Institute of Cancer Research: Royal Cancer Hospital, a charitable
Company Limited by Guarantee, Registered in England under Company No.
534147 with its Registered Office at 123 Old Brompton Road, London SW7
3RP.

This e-mail message is confidential and for use by the a...{{dropped:9}}



More information about the Bioconductor mailing list