[BioC] Annotation of hgu133a2 chip from limma

[Ron]

   Why don't you use the Gene Annotation tool in EzArray? You don't even need
   to write any codes. Try it at [1]http://xulab.wisc.edu/ezarray/ (only guest
   account is allowed).
   Ron
   Marc Carlson wrote:

Pengcheng Lu wrote:


Greetings-

I want to annotate the gene symbols and other gene information for
affy chip hgu133a2. Tried many times but failed. Can you tell me how
I can finish it using limma or other packages in R?

Thanks,
Pengcheng Lu
        [[alternative HTML version deleted]]

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Have you tried using the annotation package yet?

[5]http://bioconductor.org/packages/2.1/data/annotation/html/hgu133a2.db.html

Here is another link to give you some directions about how to use
annotation packages in case you are new to this:

[6]http://bioconductor.org/packages/bioc/vignettes/annotate/inst/doc/annotate.p
df


But if you have already tried these things, can you please tell me what
you have tried so far ( with results to a sessionInfo() in R) ? We even
have a posting guide to help you know what sorts of things to put into
your post here:

[7]http://www.bioconductor.org/docs/postingGuide.html


Maybe if I know a little bit more about what you are trying to do I can
help you out better. ;)



Marc

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References

   1. http://xulab.wisc.edu/ezarray/
   2. mailto:Bioconductor at stat.math.ethz.ch
   3. https://stat.ethz.ch/mailman/listinfo/bioconductor
   4. http://news.gmane.org/gmane.science.biology.informatics.conductor
   5. http://bioconductor.org/packages/2.1/data/annotation/html/hgu133a2.db.html
   6. http://bioconductor.org/packages/bioc/vignettes/annotate/inst/doc/annotate.pdf
   7. http://www.bioconductor.org/docs/postingGuide.html
   8. mailto:Bioconductor at stat.math.ethz.ch
   9. https://stat.ethz.ch/mailman/listinfo/bioconductor
  10. http://news.gmane.org/gmane.science.biology.informatics.conductor