[BioC] probe level data with aroma.affymetrix

[Henrik Bengtsson]

Hi,

since aroma.affymetrix is not on BioC, please post your questions to
the aroma.affymetrix mailing list instead.  I will answer your
question there in due time.

/Henrik


On Jan 24, 2008 9:47 PM, Yuan Jian <jayuan2008 at yahoo.com> wrote:
> Hello,
>   in affy package, we can get probe level raw data using pm or mm methods as below:
>
>   > library("affydata")
>   > data(Dilution)
>   > pm(Dilution, "1001_at")[1:3, ]
>
>                  20A  20B  10A 10B
>   1001_at1 129 93 130 73.8
>   ...
>
>   if I use aroma.affymetrix as below:
>   > cs <- AffymetrixCelSet$fromName("anth", chipType="HuEx-1_0-st-v2")
> > cdf <- AffymetrixCdfFile$fromChipType("HuEx-1_0-st-v2");
> > setCdf(ds, cdf);
>
>   how can I get pm or mm data from cs. something like >pm(cs, "1001_at")[1:3,]?
>
>
>   thanks
>   yuan
>
>
>
>
> ---------------------------------
>
>         [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>